Protein Info for BPHYT_RS03550 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1396 transmembrane" amino acids 30 to 56 (27 residues), see Phobius details amino acids 1328 to 1352 (25 residues), see Phobius details TIGR02099: TIGR02099 family protein" amino acids 480 to 1383 (904 residues), 534.2 bits, see alignment E=3.5e-164 PF13116: DUF3971" amino acids 588 to 875 (288 residues), 148.2 bits, see alignment E=3.9e-47 PF13502: AsmA_2" amino acids 1121 to 1374 (254 residues), 219.8 bits, see alignment E=4.1e-69

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0728)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SXB3 at UniProt or InterPro

Protein Sequence (1396 amino acids)

>BPHYT_RS03550 hypothetical protein (Burkholderia phytofirmans PsJN)
MSERNESADPRETVQVRPVSGSDHIVLRRILHVVLALALVLYFIAMGLFLGLRYVVLPRV
DSFRPRIEAAISEKLHAQFTIGKLAPHWSSFQPGLDVTNLIIRDHDGKAALTIPHATATL
SWRSLWQFRPALSSLIVDQPDVLVSRSSDGVLSVAGVPVPTRHSGNDTLSTWLLRQQAIV
VRGGALRWRDAQHDAPELALRDIRIAILNDGYDHRLALQAPADGQVLHGPLDFRTHFKHA
PLSAIGKPINWTGQVYVSTGPVDLPTLARYVNFPIETFAGRIDNAIWIDFAEGRMKSAGG
QLAGTDVALRVRPTQPKLLVPVANFSWRLEAAEGDYKLQLTNLHAELGQPPLDDGTPLTR
TLALTTLDGRYRTASQQHGQLFSVSGDRVDLGILAEFSRALPLPRRLLNNLVRFNPRGLV
ANYVIEVERGKPASGEAGSDRYPSGAEPIEHYRFKGDLQGISVAAQEPPPGLTPLNHPRA
GIPGIENLWGNVDADETRGTALLDTSNVAITLPGVFDDPRLKLDYLHGRADWTITPKKPG
ENRPAFTVKLADFRVSNADVAATASADYSNPGHGRGSLDLKADFQRAQVTRIVRYLPTSI
SEKLRIYLGHGLQAGMSHGATIEIHGDLTKFPYSRDPAAGQFHIVAPFKGGKFDPTPFPP
RNMRNGTPNVWPALDGIDGVFELKQNVLRFDVDRAHYKQVALMGVSGRIDDLGTKASSLV
IKGDGHGPLADMLDYVNASSLGIMAKHETEKVRAEGPASLALQLTVPRTPKPHIAVEGAL
GFQNNRLSVDNVPPLSQLKGKVHFTEHTAQVDRLSGQFLGGDVHANGGLKQDGTYALDLG
GHIAVDAARDLNLHGPAAQVLTRMSGSAPYALNVRGAKGRLPEVKANSDLTGLALDFPAP
FNKPVGTPMPLRFAVSPAAAPGEAGLQRAELTFGPIAATYLLRYQPQTAPTVVRGAVGVN
KPADLPSEGVIAAVDLDTFDADAWRALITQMRSKEAPAPAAATPVTPNPTVTQFLPSRFA
LHVGTLTLLKRHWDSVIVGASHTDRTWQANIASNQVSGHVSWLPGATKESPGTLQARFAR
VVIPSATDKDLIGQAMSAPAQNMPSIDLVVNELIFRDRNVGRLEVDAHNFDENGVPVWQL
DKLDITNSAATLTATANWRTSTELGNSADEATPRRTVFDFKLDIKDAGALLERFGQPRTL
KGGAGSLSGKVVWQGGPTKIDYPTFNGNLAVDLRHGQILKVDPGVAKLLGVLSLQSLARF
ATLNFRDVIGEGLPFEHVTGTAQVHNGIGRTENFELVTAPARAEMKGSVDLAQESQDLRV
HVVPTISAGAGVIAAAVINPLLGLGALVADVAFSQTVSHAFARDYAITGSWSKPHVERVR
SDRGKMDAPASTVEAN