Protein Info for BPHYT_RS02990 in Burkholderia phytofirmans PsJN

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 461 transmembrane" amino acids 23 to 47 (25 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details amino acids 119 to 140 (22 residues), see Phobius details amino acids 149 to 170 (22 residues), see Phobius details amino acids 176 to 193 (18 residues), see Phobius details amino acids 260 to 280 (21 residues), see Phobius details amino acids 292 to 315 (24 residues), see Phobius details amino acids 322 to 340 (19 residues), see Phobius details amino acids 346 to 371 (26 residues), see Phobius details amino acids 389 to 433 (45 residues), see Phobius details PF07690: MFS_1" amino acids 29 to 395 (367 residues), 131.5 bits, see alignment E=3.6e-42 PF00083: Sugar_tr" amino acids 59 to 445 (387 residues), 135.5 bits, see alignment E=2.6e-43

Best Hits

KEGG orthology group: K08369, MFS transporter, putative metabolite:H+ symporter (inferred from 100% identity to bpy:Bphyt_0613)

Predicted SEED Role

"Transporter, MFS superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SXJ3 at UniProt or InterPro

Protein Sequence (461 amino acids)

>BPHYT_RS02990 MFS transporter (Burkholderia phytofirmans PsJN)
MAIGIVNSGARLDRLPIASFHWKILGLISAGAFLDAFDIYLAAGALGAMVKAGFSDLKLN
ALFISVTFLGMLIGAGFAGYLGDRFGRRSSYQTNLLIFGVASIAACFVPNMMWLIVLRLI
MGVGLGAELVVAAGTLCEFIPPASRGRWTALLALIINSGLLVSTAVGYVVIPLLGWRYMF
AIAGVGAIIVWVLRHRMPESPRWLESVGRSEEAEATVSAIESEVQRQKGPLPPVERTESL
EVPKAPFSALFSHAMLGRTLVAILTAVAVNISVYGFVAWLPTFFVKEGLTIVQSLGFTTL
MAFGAPGGALVGFFCADRIGRARGLVIFAIATIVVGFIYPNMHAGWAISSVGFVLITCIY
TVTTLGLFAYIPELFPTELRLRGTGTAGVCGRAASMSTPYLAVLLYSSFGVSGVLAMVSS
VLALLVFGILLLRVETNQHALERISPSLDTDSDSLPATQQG