Protein Info for BPHYT_RS02960 in Burkholderia phytofirmans PsJN

Annotation: peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 155 to 178 (24 residues), see Phobius details amino acids 209 to 229 (21 residues), see Phobius details amino acids 360 to 382 (23 residues), see Phobius details PF03929: PepSY_TM" amino acids 7 to 384 (378 residues), 200.7 bits, see alignment E=2.4e-63

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0607)

Predicted SEED Role

"Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SXI7 at UniProt or InterPro

Protein Sequence (408 amino acids)

>BPHYT_RS02960 peptidase (Burkholderia phytofirmans PsJN)
MRRQLVRLHRWFGVATALFLFVAGLTGAIIAWDHELDAALNPSFFKARTAGPALSGLELA
RRVEAADPRLQVTYLPLAAEPGHTLQMMVLPRTDPATQKPYPLDFNQIAVDPATGEIQGR
REWGVVSLARLNLIPFIYKLHYTLQLPFTGGVDIGTWVMGIVGIIWLFDSVIALLLSFPS
VKAWRKSFAFRLGRGGYTFTFDLHRSGGVWIWGLLMIVALTSVSMNLSAPVVRPIVSLFS
KLTPDPINNPEILRAPQPGDTVLSRERIVQLAEQAGRAQKLSVAPGGIYYAEFMHAYGVG
FYATGNDHGDLGLGNPWMYWDAATGKLLGAQIPGKGTAGDIFVQVQFPLHSGRILGLGGR
ILISAVGIAVAALSATGLLIWLKKLNARRRSAQNANLARDAGRSAARS