Protein Info for BPHYT_RS02920 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details amino acids 27 to 28 (2 residues), see Phobius details transmembrane" amino acids 21 to 26 (6 residues), see Phobius details TIGR04409: LPS export ABC transporter periplasmic protein LptC" amino acids 9 to 187 (179 residues), 168.4 bits, see alignment E=5.9e-54 PF06835: LptC" amino acids 12 to 188 (177 residues), 156.4 bits, see alignment E=3e-50

Best Hits

KEGG orthology group: K11719, lipopolysaccharide export system protein LptC (inferred from 100% identity to bpy:Bphyt_0599)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SXH9 at UniProt or InterPro

Protein Sequence (202 amino acids)

>BPHYT_RS02920 hypothetical protein (Burkholderia phytofirmans PsJN)
MNQFRLTSLIPLVAMAALAGITWWLLQATLPRQNEGVVRPKEHTPDYFADNFSVSELDQS
GSTQYRLTAQSLIHYEDDELSDLVKPAMRAFQPGKPIVTATGDTGKVNGDASIVDLYDNA
RIVRAPGYGDPQMQADSQHFRVLVNDDVIETEKPVKLQRGMSVMTASGMNYNNVTRVMQL
FGNVKGNIAPSEAGGSSPKQPG