Protein Info for BPHYT_RS01945 in Burkholderia phytofirmans PsJN

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 140 TIGR00252: TIGR00252 family protein" amino acids 24 to 135 (112 residues), 101.2 bits, see alignment E=2e-33 PF08378: NERD" amino acids 26 to 93 (68 residues), 24.7 bits, see alignment E=2.9e-09 PF02021: UPF0102" amino acids 30 to 122 (93 residues), 91.3 bits, see alignment E=4.2e-30

Best Hits

Swiss-Prot: 87% identical to Y149_PARXL: UPF0102 protein Bxeno_A0149 (Bxeno_A0149) from Paraburkholderia xenovorans (strain LB400)

KEGG orthology group: K07460, putative endonuclease (inferred from 99% identity to bpy:Bphyt_0405)

Predicted SEED Role

"Predicted endonuclease distantly related to archaeal Holliday junction resolvase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SWN6 at UniProt or InterPro

Protein Sequence (140 amino acids)

>BPHYT_RS01945 hypothetical protein (Burkholderia phytofirmans PsJN)
MSAAAPNGAFTTPHNFSGLVGSKLVGAAFELRAQEFLQRQRLRFVARNVSCRGGEIDLVM
RERDGALVFVEVRARAQRRYGGAAASVGWQKKQRIVRAAQHFLVTHASRWRDQPACRFDV
IAFEAGRLVWLRDAFRADEV