Protein Info for BPHYT_RS01720 in Burkholderia phytofirmans PsJN

Annotation: acriflavin resistance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1060 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 334 to 353 (20 residues), see Phobius details amino acids 360 to 380 (21 residues), see Phobius details amino acids 386 to 410 (25 residues), see Phobius details amino acids 431 to 452 (22 residues), see Phobius details amino acids 457 to 478 (22 residues), see Phobius details amino acids 539 to 560 (22 residues), see Phobius details amino acids 883 to 905 (23 residues), see Phobius details amino acids 912 to 930 (19 residues), see Phobius details amino acids 937 to 962 (26 residues), see Phobius details amino acids 984 to 1006 (23 residues), see Phobius details amino acids 1018 to 1042 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 3 to 1041 (1039 residues), 680.4 bits, see alignment E=4.1e-208 PF03176: MMPL" amino acids 839 to 1047 (209 residues), 26.4 bits, see alignment E=3.4e-10

Best Hits

KEGG orthology group: None (inferred from 56% identity to bcj:BCAM1421)

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T1Q6 at UniProt or InterPro

Protein Sequence (1060 amino acids)

>BPHYT_RS01720 acriflavin resistance protein (Burkholderia phytofirmans PsJN)
MWIVRLALRRPYTFVVLALLLLIVGPLTILRTPTDIFPNIDIPVLSVIWSYNGLPADEME
KRIVLNYERGLSVAVNDIEHTESTSLNGIAVIKIFFQPHANIDEALAEVTALSQTQLRSL
PPGITPPNILRYNASTVPILRLALSSASLTEQELYDFGNNFLKTQLATVPGASAPLPYGG
KQRQIMVDIDSRKLQERNLSPMDVVNAVTAQNLILPSGTAKIGSTEYSVEMNGSPDSLAG
LNNIPIKSTANGTVYIRDVAHVRDGFQPQTNIVRVNGQRAALLTINKSGNTSTLEIVDRI
KSMMPTLRNLVPASLNIDPVADQSLFVRASVQGVLREALIAACLTGLMILLFLGNWRATL
IIAVSIPLSMITSIIALSLLDETINIMTLGGLALAVGILVDDATVAIENISHQLEQGKTL
EQAILDGAHQIAIPTLVSTLSICIVFVPMFLLTGVAHYLFIPLAEAVVFAMLASYFFSRT
LVPTLAKYLLRYHHRPADLHHTPAQTRNPFMRVHYAFEGGFARLRERYRVFLEARVARPG
LFMTLFLVCCGASMLLMPFLGRDFFPAVDAGTIALHLRAKTGMRVEETAVVTDRVDTRIR
QLIPPGELHSIIDNIGLPVSGINLSYSNTGTIGTSDADVLITLNTDHHPSAAYVRTLRRT
LTDEFPGVQFAFLPADIVSQTLNFGMPSPIDIQIVGRDVAGNRVFAAKLLNRLRTVPGLV
DARIQQPADLPRIFIDVDRTRAQQAGFSQRDIASNLLITLSGSQQTTPTFWLNPRNGVSY
NVITEAPQYTIDSLQSLANIPLNANGRSNILGSLATMRREAGNATLTHYNAQTTIDIFGT
ADGRDLGGVSDDVRKIIDDARADLPKTSTIEVRGQVQTMNDSFSGLFAGLVFAILLVYLL
IVVNFQSWLDPFIIITALPGALAGIVWMLFLTHTTLSIPALTGAIMCIGIATANSILVIS
FAREQLLEHGDATRAAIEAGFTRFRPVLMTALAMVIGMVPMAIGLGEGGEQNAPLGRAVI
GGLTIGTLATLIFVPVVFSMIYRRLAARRLRAAEHVVGKP