Protein Info for BPHYT_RS00905 in Burkholderia phytofirmans PsJN

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 PF07287: AtuA" amino acids 6 to 441 (436 residues), 472.9 bits, see alignment E=4.9e-146

Best Hits

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0192)

Predicted SEED Role

"Protein of unknown function DUF1446"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T0Q6 at UniProt or InterPro

Protein Sequence (445 amino acids)

>BPHYT_RS00905 ABC transporter substrate-binding protein (Burkholderia phytofirmans PsJN)
MAGSTVRIGAGAGFAGDRIDPARDLAERGNLDFLVFECLAERTLAYGHLARSQDPNKGYN
PRLEKRLAAVLQACVRGGTTIVTNMGVANPRAAGALAVDLARRMGLKIRVAIVEGDDVTS
QISDQTFLPEIGKTVGEAGLRMVGANAYLGAEAIIPALDTEPHIVITGRVADPSLFLAPI
AHRNGWKLDDWMTLGAGTVVGHLLECTSQVTGGYFADPPYKEVPNLAYVGFPLAEVQPDG
SCIITKLDGTGGFVNELTVKEQLLYEVHDPRAYLTPDVTADFTNVQIEVAGKDRVAVRGG
IGRERPAQLKTIVGFDGGFLAEAGISYAGPGAENRARLAASIIEERMRNLHGCADKIRLD
LIGINSLHATAIQREAITQDVRVRAAMRTTDREMAETLLSEVESLWVSGPAGGGGYRGNI
DSSVKTHAVFVNRDAIETKVEVLQS