Protein Info for BPHYT_RS00710 in Burkholderia phytofirmans PsJN

Annotation: branched-chain amino acid ABC transporter ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 247 PF00005: ABC_tran" amino acids 17 to 158 (142 residues), 110 bits, see alignment E=1.6e-35

Best Hits

KEGG orthology group: K01996, branched-chain amino acid transport system ATP-binding protein (inferred from 100% identity to bpy:Bphyt_0149)

Predicted SEED Role

"Urea ABC transporter, ATPase protein UrtE" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2T027 at UniProt or InterPro

Protein Sequence (247 amino acids)

>BPHYT_RS00710 branched-chain amino acid ABC transporter ATPase (Burkholderia phytofirmans PsJN)
MLHIENLCAGYGDIDVVHNLALDVMPNEVVGVLGCNGAGKTTLVKAIMGLLPRMSGQVAF
LGQPLKGLRTHEIARRGIGLVPQGRWIFPKLTVRENLLMGTQAAGGADILDEVFDYFPVL
KSRLSQQGGTLSGGEQQVLAISRALCGRPKLLLLDEPSDGVQPNLVERIGEVIPDLCRRS
KLAVLLVEQNLDLVLQSAQRCIVLSNGRLVHAGTVEPQPGDSGEHPLARYLSPAAELAAD
SQHENLQ