Protein Info for BPHYT_RS00185 in Burkholderia phytofirmans PsJN

Annotation: putative transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 376 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 33 to 55 (23 residues), see Phobius details amino acids 63 to 82 (20 residues), see Phobius details amino acids 90 to 110 (21 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 150 to 169 (20 residues), see Phobius details amino acids 195 to 216 (22 residues), see Phobius details amino acids 228 to 253 (26 residues), see Phobius details amino acids 260 to 280 (21 residues), see Phobius details amino acids 287 to 307 (21 residues), see Phobius details amino acids 319 to 340 (22 residues), see Phobius details amino acids 347 to 367 (21 residues), see Phobius details PF07690: MFS_1" amino acids 2 to 318 (317 residues), 107.8 bits, see alignment E=2.9e-35

Best Hits

Swiss-Prot: 70% identical to OPDE_PSEAE: Transcription regulatory protein OpdE (opdE) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 100% identity to bpy:Bphyt_0038)

MetaCyc: 39% identical to purine ribonucleoside exporter (Escherichia coli K-12 substr. MG1655)
RXN0-18; RXN0-22

Predicted SEED Role

"Putative transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B2SZA9 at UniProt or InterPro

Protein Sequence (376 amino acids)

>BPHYT_RS00185 putative transcriptional regulator (Burkholderia phytofirmans PsJN)
MSLCVFALIASEFMPVSLLTSMANDLHVTEGMAGQGIAISGAFAVLTSLSISALAGSLNR
KTLLLGLTALMAVSGAVIALASNYPAYMAGRALIGVVIGGFWSMSAATAMRLVPAHQVPR
ALAIFNGGNALATVIAAPLGSYLGLVMGWRGAFFCLAPVAAVTLVWQWVSLPSMQPEARA
AGSPNVFRLLRSRSVALGMAACGAFFMGQFALFTYVRPFLETVTHVGVSTLSLILLVIGV
AGFIGTALIGAVLKLGLYRTLIVIPVLMALIALALIPLGASIADVGALLGVWGLIATAAP
VGWWSWIAEAMPQSAEAGGGLMVAVIQLSIALGSTVGGLLFDTSGYRSTFVASAVVLLLA
AFLTFLTSRSLTSHTA