Protein Info for BBR_RS17015 in Bifidobacterium breve UCC2003

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 17 to 40 (24 residues), see Phobius details amino acids 53 to 75 (23 residues), see Phobius details amino acids 82 to 103 (22 residues), see Phobius details amino acids 109 to 130 (22 residues), see Phobius details amino acids 142 to 164 (23 residues), see Phobius details amino acids 172 to 193 (22 residues), see Phobius details amino acids 215 to 236 (22 residues), see Phobius details amino acids 250 to 268 (19 residues), see Phobius details amino acids 289 to 322 (34 residues), see Phobius details amino acids 374 to 395 (22 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 343 (322 residues), 144 bits, see alignment E=2.8e-46

Best Hits

KEGG orthology group: None (inferred from 92% identity to bll:BLJ_1322)

Predicted SEED Role

"Arabinose efflux permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (401 amino acids)

>BBR_RS17015 MFS transporter (Bifidobacterium breve UCC2003)
MTNAPVTNARTDRFFNFSVTILIFASFMLGMSEFVVVGILPDIASGLKISEVTVGNLVAL
FAFVYAPCTPIGSALSARFPRFATYLILMGVFLVGNILCALAPNYPVLLIARLLIASVSG
TLVAISMTFAPDVTTDKYRTKFIAWVFSGFSIASVVGVPIGTWVANTFGWRVTFYLVSVL
TAVLMISMALVLPRNSHPAKIGFLRQFRLFFDRRIQLGVLDVVCGAAASYVFYTYLSPIM
RDEIGVPEQYLSIGLVIYGCACLWSNLYGGKLADKGRGVEPLTHIRPIYCVQAVCLCLLA
FASLVPAAGALLLVALGMLMYLQNSASQVLYMDVAYQSHPGSVNLAASLNSMSFNIGIAI
GSAVGGLVNDLLGLAWLGPVGAIFALFAAGITTLLRPYIQR