Protein Info for BBR_RS15525 in Bifidobacterium breve UCC2003
Annotation: RNase adapter RapZ
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 87% identical to Y1085_BIFLS: Nucleotide-binding protein Blon_1085/BLIJ_1109 (Blon_1085) from Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12)
KEGG orthology group: K06958, UPF0042 nucleotide-binding protein (inferred from 87% identity to bln:Blon_1085)Predicted SEED Role
"Hypothetical ATP-binding protein UPF0042, contains P-loop"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-positive bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (321 amino acids)
>BBR_RS15525 RNase adapter RapZ (Bifidobacterium breve UCC2003) MSQPSSIHDSGNQVDTHSDSAAADNQPNPADAFEVLLITGMSGAGRSRAADSVEDMGWYV VDNLPPKLLVPLVDMMTTSGSDSGVHKLAAVIDVRSRSYFDDLAAVLGHLDDLGVKTRIL FLDASNDVLIKRYESVRRPHPLQHGNRLIDGILEERHLLENLKERADWVIDTSSLSIHQL STKLYETMLGSGPTTVAVHIFSFGFKYGMPIDADFVADVRFLPNPFWVPSLRELTGADKP VADYVLSSKGAKEFLDSYERAIETAIEGYAQEDKHFVTIAIGCTGGQHRSVAMSEELARR LRAHGLNVTVSAREQHHRRSS