Protein Info for BBR_RS12965 in Bifidobacterium breve UCC2003

Annotation: fibronectin type III

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2174 transmembrane" amino acids 27 to 52 (26 residues), see Phobius details PF17963: Big_9" amino acids 496 to 588 (93 residues), 28.9 bits, see alignment (E = 6.8e-10) amino acids 885 to 975 (91 residues), 30.7 bits, see alignment (E = 1.8e-10) PF00041: fn3" amino acids 1506 to 1573 (68 residues), 34.9 bits, see alignment (E = 7.2e-12) PF20030: bpMoxR" amino acids 1870 to 2046 (177 residues), 30.3 bits, see alignment E=1e-10 PF00493: MCM" amino acids 1876 to 2016 (141 residues), 26.8 bits, see alignment 1.2e-09 PF07726: AAA_3" amino acids 1898 to 2028 (131 residues), 214.4 bits, see alignment 2e-67 PF07728: AAA_5" amino acids 1898 to 2026 (129 residues), 54.7 bits, see alignment 5.2e-18 PF00004: AAA" amino acids 1900 to 2014 (115 residues), 31.6 bits, see alignment 9.4e-11 PF17863: AAA_lid_2" amino acids 2090 to 2163 (74 residues), 77.9 bits, see alignment (E = 1.8e-25)

Best Hits

KEGG orthology group: None (inferred from 67% identity to blj:BLD_0957)

Predicted SEED Role

"FIG022979: MoxR-like ATPases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2174 amino acids)

>BBR_RS12965 fibronectin type III (Bifidobacterium breve UCC2003)
MGTSSQSHTDFHRIRNARHGHPPSDNYTWAVPAFTLLILTVLIAGAVMISIVTRHHVQLD
DGTVWVTSLANQKAARFNVKNREADASVVSSSPRFDIAQHNGTTILAEPTKASAIASSTL
STSMQTSLKAHTTASVGGSTVAFINENTGNVWVGSSDELDAVSPSVDSPRMRLGTGGRIV
VTHDGAVYGYRPRDGVVFRLDSPNSSQIKQLESLTDGQPRAADSFTVIGGVPVISSGNTI
IHASGQTTIEASDTLTLQSPPVDGNQNDWVAASSPRGLAIVRLSSTAKPIFHLTGGTSQA
ARPVSVNGCIYAAWSQQARNYIRTCTPDSAHIAFQTLESIHATSELVFRTNHRVAVLNDV
IEGNVWNPDDSTAVIAMQWNQIQTQHHDSTQRNEDSATNHQDFSETCSEQSGDIKAEDDA
FGARAGSEQILDVLRNDEQTDCSVLNIIRVGAPQGGDVTVSPIYAGRYLQLDASAASAGT
VTFAYDISDGRGQTSTANVTVTLHDGDNHTPLQSDTPSEINVEQGASYVANALGSFVDPD
GDPLTLVSAVVQYTDKAQVFTRPDGKITFNAGDMTSGRVGVEITVSDGMATGTGFMYFSV
KPANTLPAVIDPIAVATTPDTDTVIELKPYVHGTSTQPMQLSHVNTLSGASTIAHPSDLS
IAFTASKPGTYYVPYTILQGSIPATGLARVDVHPVTKATAKPVAANDVALLGTDNTAIVE
PLSNDIDPMGGVLSVTSVDVPSDSGIKAGLVDHKRVYVTAHQVPSKPIPIRYNVANAAGT
ATGTIVLHPPALAAESSTPTAGDINIQVRTGGIVSVDVLNHVTYSDSTTITLKDNLQYDE
STFAGLVFTSGSIVRYQASSQAGVFPVTYTVEDHTGNAASGIVIITVHESQAGNKAAPTP
HNTEAQVAAGQTVRIPITLTGIDVDGDDDQLLGLGNTAPELGRIAEVGSDYLVYEAYPDS
CGTDIFSYAVEDWTGQRAQAQIRVGVFQGASESSVHARDDDITLRPNTSASVPVTLNDIS
ADNTDLTIGTTVEAQGIDDVMVENNMLLFTTPEHATTAHIAYTAYNTAGLADTATLTVNV
DPSAPIEPPAAYDCRVPAADTIDKQSMDVDVSPWIANPSGTASELEVAIHPSATDHARVG
EGSASTIVTVDLTSQARAVPYTVTNTTHHVTSTAFIHVPAYGVFPPILRPKAPEIIVNAR
QTVHININDYVRVGAGKEPYLESADSITATKASNTDFRVDGKTLKFTAIKDYAGPASITF
TVTDGNRPDASAIINTAVVTLPITVLGRTTPPPTFSSPTIDIEAGAEPKTIDLTALTHTP
PGLHDDEKRYVYSSGGTSSEHILSSLSSSGKLHISASKNAPAGATASIPVHITYGKGTVH
AGVMVRVVESTRPLARLAAATLQLKAGSSGSVNPLENAYNPFPDSPLTVTACQADDTAKI
TITSCSSTAITISASPNIGASSNMVLVTVRDGTTATAREVTGTITLSIVDKPDAPLLFPI
AGDPQDGVVTLNWSAGAANGSPITDYRVRWSGASNGEQSCGTSTRCRITGLKNGRIYSFT
LSARNDVGWSAASAAVTAIPDKTPTAPVNVTVEGGNARAAITWSPIDGDFSEVDNYMVTV
SGVGVLQTKETGNTTTKLSFIFNNDSISDGTLVTATVKAHNRAGWSPESGTSEPKAIWGD
PDAPSIELADDDIPAVTITPGNNRNAGCERIELSGAAADTIGCSGGTVGFDISNQKDSAD
EITVTATLIPSRDAKPATATATFTSTDFTQSTTPQENTMNPTIDDATYLSDATRISHAVY
LPDDTQLAQTLYPPELEHQAPCDDTNISLQQFKPISHATQRPKTSHAGTFAQTAAQATPD
IHYFQQSFNALVENIAIAVAGKTTPIKQCVTALLAGGHVLLEDNPGTGKTQLARALANSI
DASFKRIQFTPDMLPSDVVGVTFYDQEHHEFEFRKGPIFASLVLADEINRASPKTQSALL
EVMEEQQVTVDGTTYNVPQPFIVIATQNPVDQLGTYKLPEAQMDRFLIRTSIGYPSQQVS
IDILKQIDIPDRAQTVSPVLTSHDVLQLRLMTAGIYIDDAIHEYIVRLVEATRHHESISI
GSSMRGALALARCARIWAAADGRDYVVPDDVNDLATPILAHRIMLVPEAIFDGITQESLI
EEILEEVPAPTVST