Protein Info for BBR_RS12095 in Bifidobacterium breve UCC2003

Annotation: Permease of ABC transporter system

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 312 transmembrane" amino acids 43 to 65 (23 residues), see Phobius details amino acids 86 to 115 (30 residues), see Phobius details amino acids 134 to 157 (24 residues), see Phobius details amino acids 177 to 199 (23 residues), see Phobius details amino acids 234 to 256 (23 residues), see Phobius details amino acids 281 to 303 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 176 to 308 (133 residues), 45.6 bits, see alignment E=3.4e-16

Best Hits

KEGG orthology group: K02054, putative spermidine/putrescine transport system permease protein (inferred from 93% identity to blo:BL0343)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (312 amino acids)

>BBR_RS12095 Permease of ABC transporter system (Bifidobacterium breve UCC2003)
MTAAIAQNGPAAAKAAGPSATPSAASSVLAKHRQELGTLASTLPFFAYTACFLLAPTVIV
VVGAFQDRSGGFTLSNFNKMFEANTVAAFGTSILVSVASSVIGAVVGALASYALVIGAKP
NGLLRRMISAISSVLAQFGGVMLAFAFIATIGINGIGTMLIKTLTGYTVNPNWLSSLPGL
ITIYCYFQIPLMIIIFLPAVDSIRPQWREACESLGGNTLQYWTRVACPILAPRFISAFLL
LFASAFSAYATAAALFSQRSILVPLMIQGAMRNEMDPNQQGFAQVLAFAMIIVVAIVMLL
SHAVEKRAGRWQ