Protein Info for Ac3H11_662 in Acidovorax sp. GW101-3H11

Annotation: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 470 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 34 to 52 (19 residues), see Phobius details amino acids 58 to 77 (20 residues), see Phobius details amino acids 88 to 108 (21 residues), see Phobius details amino acids 127 to 145 (19 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 189 to 211 (23 residues), see Phobius details amino acids 218 to 237 (20 residues), see Phobius details amino acids 242 to 262 (21 residues), see Phobius details PF02233: PNTB" amino acids 7 to 466 (460 residues), 669.7 bits, see alignment E=1.2e-205

Best Hits

KEGG orthology group: K00325, NAD(P) transhydrogenase subunit beta [EC: 1.6.1.2] (inferred from 92% identity to adn:Alide_4155)

Predicted SEED Role

"NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)" in subsystem Phosphate metabolism (EC 1.6.1.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.6.1.2

Use Curated BLAST to search for 1.6.1.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165JW06 at UniProt or InterPro

Protein Sequence (470 amino acids)

>Ac3H11_662 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) (Acidovorax sp. GW101-3H11)
MSQSLATVAYLGAAILFILSLGGLSNPETSRRGNLFGMVGMALAVLATVFGPRVSASGMA
WIVGALVIGGGIGLYAAKVVKMTQMPELVALMHSLVGLAACLVGFASYVDTSIQLQGAEK
IIHEVEIYVGILIGAVTFSGSLIAFGKLNGKIGGKPLLLPGRHWMNLAALLIVIWFGREF
LRAETVEQGMLPLTVMTVIALLFGIHMVMAIGGADMPVVVSMLNSYSGWAAAATGFMLSN
DLLIVTGALVGSSGAILSYIMCNAMNRNFISVIAGGFGSGGGAPAKKGDAAEPQGEVVPV
AATETAELLRDAKSVIIVPGYGMAVAQAQHTVNEIVKTLREKGTNVRFAIHPVAGRMPGH
MNVLLAEAKVPYDIVMEMDEINEDFPEADVAMVIGANDIVNPAAQDDPTSPIAGMPVLEV
WKAKTSIVMKRSMASGYAGVDNPLFYKDNNRMLFGDAKKMLDEVLAALKG