Protein Info for Ac3H11_607 in Acidovorax sp. GW101-3H11

Annotation: Predicted L-arabinose ABC transport system, ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 PF00005: ABC_tran" amino acids 34 to 187 (154 residues), 96.8 bits, see alignment E=1.8e-31 amino acids 291 to 445 (155 residues), 86.4 bits, see alignment E=2.8e-28

Best Hits

KEGG orthology group: K02056, simple sugar transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 85% identity to aaa:Acav_2889)

Predicted SEED Role

"Predicted L-arabinose ABC transport system, ATP-binding protein" in subsystem L-Arabinose utilization

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.17

Use Curated BLAST to search for 3.6.3.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165IRN9 at UniProt or InterPro

Protein Sequence (517 amino acids)

>Ac3H11_607 Predicted L-arabinose ABC transport system, ATP-binding protein (Acidovorax sp. GW101-3H11)
MTVSMDASTAHAPAAAPVLQLSGIHKQFAGITVLRDVQLNLYPGEIHALMGQNGAGKSTL
IKVLTGVLEASGGQMRLGGQAVWPDSPLAAQRLGISTVYQEVNLCPNLSVAENIFAGRYP
RCGIAQGFRIDWATLHQRARDLVARIGLQIDVTRLLSDYPVAVQQLVAIARALSIESRVL
ILDEPTSSLDDDEVQKLFEVLRRLRSEGLSIVFVTHFLNQVYAVSDRITVLRNGSWVGEW
LAKDLGPQALIAAMLGRDLAAASEQPAPAPAVDSRHANLLQAEGLGQDTQLQPLDLQIRA
GEVVGLAGLLGSGRTELARLLFGLEQPDRGALRIDGQVVKFANPMDAIRHGLALCPEERK
TDGIVAELSVRENIALALQARMGVGKFLSRSEQTELAERYVKLLGIKTETVDKPIGLLSG
GNQQKAILARWMAIEPRLLILDEPTRGIDVAAKQEIMDQILRLAQAGMAVLFISSEMSEV
VRVAHRIVVLRDRRKVGELPAGSSEDAVYDLIAAEHA