Protein Info for Ac3H11_4446 in Acidovorax sp. GW101-3H11

Annotation: Cytochrome c5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 182 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details PF13442: Cytochrome_CBB3" amino acids 78 to 151 (74 residues), 60.8 bits, see alignment E=1.3e-20 PF00034: Cytochrom_C" amino acids 81 to 154 (74 residues), 29.5 bits, see alignment E=1.6e-10

Best Hits

KEGG orthology group: None (inferred from 72% identity to ajs:Ajs_0320)

Predicted SEED Role

"Cytochrome c5"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165LLI8 at UniProt or InterPro

Protein Sequence (182 amino acids)

>Ac3H11_4446 Cytochrome c5 (Acidovorax sp. GW101-3H11)
MSDNHHEEAHTGPIKTPKQLLLASFFSFVIPIFAIIGLVIYVTSADKPAAGAVNPEKAIA
ERIQKVGMVEVRDANRPLKGGEEVFKAQCTACHTSGAAGAPKVGDAAAWSARIKTGFETL
VQSALKGKGAMAPQGGGDFNDTEIARAVAYMANASGGKFDEPAAPAAAGGDAAAAAAPAA
SR