Protein Info for Ac3H11_4377 in Acidovorax sp. GW101-3H11

Annotation: Cyclic di-GMP binding protein precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 791 signal peptide" amino acids 1 to 55 (55 residues), see Phobius details transmembrane" amino acids 756 to 777 (22 residues), see Phobius details PF03170: BcsB" amino acids 76 to 691 (616 residues), 755.8 bits, see alignment E=1.7e-231

Best Hits

Predicted SEED Role

"Cyclic di-GMP binding protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165K4R9 at UniProt or InterPro

Protein Sequence (791 amino acids)

>Ac3H11_4377 Cyclic di-GMP binding protein precursor (Acidovorax sp. GW101-3H11)
VHNTPSAFPVFQDFSLTMISTRHPTARLPRQRMLPAMLALVLAGAAAPVSQLAAAPAPLA
APAPVAVPPAESGVRVHRASLKELGALFPLQLRGVDGTSGVAFSVRNDEVVVGAKLKLNY
SYSPALLTNLSHIKVLVNEQVAATIPVTTQQAGENLQREITIPPRLITEFNRLNLQLIGH
YTMECEDPLHSSLWANIGNDSVLELTVAPVAQTNDLALLPQPFFDRRDVRPLELPIVFNA
APNAGTLQAAGTMSSWFGALAGFRGAKFPSLIGELPARGNAVVMVAGRAQAPAGLALPEI
SGPTVAVVSHPTDRNGKLLLVMGRDDAELVVAAKALAIGSSALSGPLARITEVTELKPRK
PYDAPHWLASDRPVKFGELAEAQALNVSGYSPDLIRVNFFLPPDLFGWRQKGIPVDLRYR
YTPRPNADKSTLNINVNQQFLRSLPLRAVNHEEQGTLDRWFTKVMPTGETVPEREKLHIP
LFKLPAQSQLQMHYYYDVVKQGACKDVPLDNVRGSVEADSTIDISGFPHFIAMPDLAAFG
NAGFPFTRMADLSESAVVMPDKAGVQELGTYLGLMGLMGRVTGFPALGVTVAQAQQVERL
GDKDLLVISSGGGNQPLLKQWASAIPAALQGDAKSFQLADLAQRVLRWWGFEDESGTRAH
RSQVAFSSSSTDAFIAGFESPLRTGRSVVLVASNQPAGLAQVMDALLDADAVTKVQGSTT
VIRGKQVDSLVAEKNYHVGQLGPLLYAQWYLSRNPLLLILLGVSAAVLVAIIMYLSLRAR
ARARLKQQKKG