Protein Info for Ac3H11_3986 in Acidovorax sp. GW101-3H11

Annotation: twitching motility protein PilJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 762 transmembrane" amino acids 94 to 113 (20 residues), see Phobius details amino acids 379 to 400 (22 residues), see Phobius details PF13675: PilJ" amino acids 111 to 220 (110 residues), 84.6 bits, see alignment E=5.3e-28 amino acids 242 to 349 (108 residues), 32.6 bits, see alignment E=7e-12 PF00015: MCPsignal" amino acids 544 to 727 (184 residues), 136.6 bits, see alignment E=8.2e-44

Best Hits

KEGG orthology group: K02660, twitching motility protein PilJ (inferred from 90% identity to aaa:Acav_0853)

Predicted SEED Role

"twitching motility protein PilJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165LYB2 at UniProt or InterPro

Protein Sequence (762 amino acids)

>Ac3H11_3986 twitching motility protein PilJ (Acidovorax sp. GW101-3H11)
MSVVNQFGKLFNRKPATPDAGAAAGTADDGQDVLATGALDGAQLRDAYQAEAMNSVQGDP
DGYPSELAASETDEELISLPLLGRSTAAGHQRRLLALLLVGVLVLGAIAFWVLQQADRSA
QQLASTGQSLMQSQRLAKSVSQALVGSPQAFPDVVESSGVLARNVRALNAGDSELGVQSL
GEPFKPDLDAVNPLMERAERNASVVMGQQKILTQVGDALRTINRQSSDLLEIAETVSSLK
LQQNAPAAEISAAGQLVMLTQRIGKSANEFQTMEGVSPEAVFLLGKDLNSFKEIAQGLLD
GSPELRLAATKDAQTREQLEALVKLYEQTRTQASAILGNLQGLVSAREAQSAIIADSEPL
RRQLEGLQSKLSAQTGLGAGQFAALALAGLFVLLCGIGISRVQLLDSRGRQAAAETQQKD
AKRQEQEAKRVNDANQAAILRLMNELQSVAEGDLTQEATVTEDITGAIADSVNYTVEELR
QLVGSVQNTATRVAQTTAQVDNTSTELLAASTEQLREIRETGRSVLDMATRINEVSTQAQ
ESATVARQSLQAADSGLQAVQNAIGGMNSIRDQIQDTSKRIKRLGESSQEIGEITELISD
ITEQTNVLALNAAIQAASAGEAGRGFSVVAEEVQRLAERSADATRQISALVKAIQTDTQD
AVAAMERSTQGVVEGARLSDSAGTALTEIDRVSRRLAELIEQISSSTSREAVLANEVADN
IQHIFAVTEQTGEGTRTTAQQVRELSHMAEELRQSVARFKIA