Protein Info for Ac3H11_3955 in Acidovorax sp. GW101-3H11

Annotation: TRAP-type C4-dicarboxylate transport system, large permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 42 to 68 (27 residues), see Phobius details amino acids 77 to 97 (21 residues), see Phobius details amino acids 102 to 122 (21 residues), see Phobius details amino acids 134 to 151 (18 residues), see Phobius details amino acids 167 to 192 (26 residues), see Phobius details amino acids 213 to 236 (24 residues), see Phobius details amino acids 242 to 260 (19 residues), see Phobius details amino acids 275 to 298 (24 residues), see Phobius details amino acids 314 to 346 (33 residues), see Phobius details amino acids 358 to 386 (29 residues), see Phobius details amino acids 398 to 421 (24 residues), see Phobius details PF06808: DctM" amino acids 7 to 417 (411 residues), 392.4 bits, see alignment E=1.2e-121 TIGR00786: TRAP transporter, DctM subunit" amino acids 17 to 422 (406 residues), 431.7 bits, see alignment E=1.3e-133

Best Hits

Swiss-Prot: 46% identical to YGIK_SALTY: Uncharacterized protein YgiK (ygiK) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: None (inferred from 89% identity to lch:Lcho_1112)

MetaCyc: 38% identical to 2,3-diketo-L-gulonate:Na+ symporter - membrane subunit (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-235

Predicted SEED Role

"TRAP-type C4-dicarboxylate transport system, large permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165LXI2 at UniProt or InterPro

Protein Sequence (427 amino acids)

>Ac3H11_3955 TRAP-type C4-dicarboxylate transport system, large permease component (Acidovorax sp. GW101-3H11)
MDTLVLLGTFFVLMMIGVPIAYSLGLSALAGALWIDLPLDAVMIQVASGVNKFSLLAIPF
FVLAGAIMAEGGMARRLVAFAGVLVGFIRGGLSLVNILASTFFGAISGSSVADTASIGSV
LIPEMEKKGYPRPFATAVTVSGSVQAILIPPSHNAVLYSLAAGGTVSIAALFMAGVLPGL
LMGLTLAALCLFTAHREGYPKGEVIPLKQALKICVEALWGLMTMVIILGGILSGVFTANE
SASIAVVWAFFVTMFIYRDYKWRDLPKLVHRTVKTVTVVMILIGFAAAFGYLMTMMMIPM
KVTAFLTSLSDNKYVILAMINIMLLLLGCLMDMSPLILILTPILLPVVKMLGVDPVHFGM
IMMVNLGIGLITPPVGTVLFTGAAVAKLPLGIVTRAMMPFFVALFVVLLMVTYVPAISLW
LPRAMGL