Protein Info for Ac3H11_3785 in Acidovorax sp. GW101-3H11

Annotation: Nucleoside-diphosphate-sugar epimerases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 PF01370: Epimerase" amino acids 26 to 240 (215 residues), 39.1 bits, see alignment E=3e-14

Best Hits

KEGG orthology group: None (inferred from 79% identity to aav:Aave_1978)

Predicted SEED Role

"Nucleoside-diphosphate-sugar epimerases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165HG99 at UniProt or InterPro

Protein Sequence (327 amino acids)

>Ac3H11_3785 Nucleoside-diphosphate-sugar epimerases (Acidovorax sp. GW101-3H11)
MNTLSNPLGALPARFRRERLLIVGCGDVGQRVVRDLSTGPGAGRLQVLALTSSPARVAGL
RQLGARPLLGNLDDAATVRRLSGVATRVLHLAPPPGEGAGGAAWWADPRTVALARVLRLR
SLPVSLAYASTSGVYGDCQGALVPETRPLAPATPRAQRRVNAERAVRHLGRAGVRASVLR
IPGIYAPDREGGTPEARLRRGTPVLVPEDDVFTNHIHADDLARACVAALWKGQPQRAYNV
SDASHMKMGDYFDLAADLYGLPRPPRVPRSTAQEQLSLMLLSFMGESRRLDNRRMLQELG
LRLRYPSVAQGLQGLHGANLSAGAQRG