Protein Info for Ac3H11_3567 in Acidovorax sp. GW101-3H11

Annotation: TRAP transporter solute receptor, unknown substrate 6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 360 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF03480: DctP" amino acids 38 to 318 (281 residues), 211.7 bits, see alignment E=7.5e-67

Best Hits

Swiss-Prot: 53% identical to TAKP_RHOS4: Alpha-keto acid-binding periplasmic protein TakP (takP) from Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)

KEGG orthology group: None (inferred from 87% identity to vap:Vapar_1572)

Predicted SEED Role

"TRAP transporter solute receptor, unknown substrate 6"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165J1N5 at UniProt or InterPro

Protein Sequence (360 amino acids)

>Ac3H11_3567 TRAP transporter solute receptor, unknown substrate 6 (Acidovorax sp. GW101-3H11)
MDRRSIIKHAGIAGVLAAGAAPAVHAQAAIRWRLASSFPKSLDTIYGGADVFSKAVKAMS
GGKFEISVHAGGELMPPFGVMDGVQQGTVEMCHTVPYYFYGKNPAFALGSAIPFGFNARQ
MNAWMLHGNGRKLMNEFYANYNAISFAGGNTGTQMGGWYRKEIKSPADFKGMKMRLGGGL
VGEVMQKLGAVPQSIPGGEIYQALEKGTLDAAEWVGPYDDQKLGFNKVAPFYYYPGWWEG
GPEVDFFVNQKAFDGLSAENKAIIEAATNVAHIDMLAKYDALNPTALKQLVAAKTKVLPF
SQAVMDASFKASMEVFAENDAKSPEWKKIYADMRTFQRDQILWFRFAEARYDTFMSAQKV