Protein Info for Ac3H11_3185 in Acidovorax sp. GW101-3H11

Annotation: Extracellular ligand-binding receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 377 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 29 to 372 (344 residues), 195.4 bits, see alignment E=3.5e-61 PF13433: Peripla_BP_5" amino acids 38 to 267 (230 residues), 43.7 bits, see alignment E=3.1e-15 PF01094: ANF_receptor" amino acids 54 to 335 (282 residues), 64.2 bits, see alignment E=1.8e-21

Best Hits

KEGG orthology group: None (inferred from 35% identity to vpe:Varpa_1751)

Predicted SEED Role

"Extracellular ligand-binding receptor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165IUL0 at UniProt or InterPro

Protein Sequence (377 amino acids)

>Ac3H11_3185 Extracellular ligand-binding receptor (Acidovorax sp. GW101-3H11)
MVRSLVVLLAALCATGLGHARNEGVTADEIRLGASAVLSGPLGPQTAQYGEGSRLMFDAV
NAQGGVHGRMIRYTTLDDGFDPQKAVENTRQLLETDKVFMIYNSTGTAQTAAILPLIKEH
RTLLFGPVTGASVFRETFNPYVFHVRAGYASEASRIVSQLRQQGISRVALFYQDDGLGKT
LAAELKKASDDEKLPFVAEIKVDPKQPDFAAAAAATEKAQPQAVIVATAGTTFTHYIKAV
QATAARPAYYGFSVASLDVINRELKDKARGIILAQIMPSLRNTTIPVVAEYLGLLRAKSP
TAQPSASQFEGFVHARLLVEGLRRTGRNLTTESFTKTMEDAGEISFGRFSVKYSPKSHNG
STYVELAIVDAEGSLRY