Protein Info for Ac3H11_3044 in Acidovorax sp. GW101-3H11

Annotation: RNA binding methyltransferase FtsJ like

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 transmembrane" amino acids 240 to 257 (18 residues), see Phobius details PF01728: FtsJ" amino acids 63 to 329 (267 residues), 126.2 bits, see alignment E=7.2e-41

Best Hits

KEGG orthology group: K06442, putative hemolysin (inferred from 80% identity to ajs:Ajs_0619)

Predicted SEED Role

"RNA binding methyltransferase FtsJ like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165JQB0 at UniProt or InterPro

Protein Sequence (332 amino acids)

>Ac3H11_3044 RNA binding methyltransferase FtsJ like (Acidovorax sp. GW101-3H11)
MRADVFLVERGHAATRSQAQRLIASGVEWRLSPLAPWQKVAKNGDDIPAIAEVQLLDGAE
ARYISRGGLKLEGALDALGLKVEGLRCLDVGQSTGGFTDCLLQRGAAQVVGVDVGHDQLH
ERLRSDPRVVYVEGVNARSLTAEALLQACELALSEVIELEEDNETQPEAPYSWMRNGGQV
DEDYDDSDDAKEKDIEAFKSERAELAKARAQGTLPVERRRRADRADVDITPEFGLVTGDL
SFISLTLVLPALVPLLAPQGDLVMLVKPQFELQPGQVGKGGIVRDEALYAVVEQRIRDCC
ATVGLAVLAWLDSPIQGGDGNREFFIHARRAA