Protein Info for Ac3H11_3008 in Acidovorax sp. GW101-3H11

Annotation: Transcriptional regulator, AraC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 PF12625: Arabinose_bd" amino acids 44 to 226 (183 residues), 188.3 bits, see alignment E=2.3e-59 PF12833: HTH_18" amino acids 282 to 359 (78 residues), 72.9 bits, see alignment E=3.2e-24 PF00165: HTH_AraC" amino acids 323 to 359 (37 residues), 28.6 bits, see alignment 1.8e-10

Best Hits

KEGG orthology group: None (inferred from 87% identity to ajs:Ajs_3765)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165JPG8 at UniProt or InterPro

Protein Sequence (362 amino acids)

>Ac3H11_3008 Transcriptional regulator, AraC family (Acidovorax sp. GW101-3H11)
MAGTLCGVKPPAPPAHRLPAPATAPAATPIAFVRAIVLAYERRGLSPERALAQAQIAPQL
LQDDSARITAWQMEQISDAAMQELDDEALGWFSRRLPWGSYGMLARASISSPTLQVALAR
WCRHHGLLTDDIALQLTTEGDTATLRITEARDLGVLREFCLVSVLRNAHGLACWMVDSRI
PLIAAEFAFDAPPHADAYAVLFRGPVTFQAPRTAIHFDARYLHLPLRRDEQALRQMLQHA
LPLTVLHYRRDRLLVQRVRQQLAAPLPGQPAHALPQHSAESLAALLHVSPRTLHRQLKEE
GATLQGLKDDVRRTRAVELLHRTQRPIKQVAEAAGFENEKSFIRAFRGWTGQSPAEFRKV
AR