Protein Info for Ac3H11_2938 in Acidovorax sp. GW101-3H11

Annotation: Transcriptional regulator of various polyols utilization, AraC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 PF12833: HTH_18" amino acids 223 to 302 (80 residues), 87.1 bits, see alignment E=8e-29

Best Hits

KEGG orthology group: None (inferred from 92% identity to xtr:100491424)

Predicted SEED Role

"Transcriptional regulator of various polyols utilization, AraC family" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165L318 at UniProt or InterPro

Protein Sequence (310 amino acids)

>Ac3H11_2938 Transcriptional regulator of various polyols utilization, AraC family (Acidovorax sp. GW101-3H11)
MTVKTPTAPRQTKPELEHDYVRSPALGYESPDTAGFIRCLAHGFPTPLARWHYHDEYELH
LITATSGKVFVGDWIGQFQPGHLVLTGPRLPHNWISMDLPEGGVPLRDLVIQFSHAPLVA
SSESIPELREVLPLLERARHGIEFFGMESQAQEHWHRIKARQGLARFGAFCEFLSDLARC
TDFRLLSSTQLQSEDNDAQLDQINAIVSRITDHLADPLAAADLAQELGMTESRFSRFFRR
ATGNTFTDFVNLVRVNRACQLLMESDRYITHIAYDVGFNNMANFNRRFLDIKGMTPSEFR
KQGAGRFGKV