Protein Info for Ac3H11_2908 in Acidovorax sp. GW101-3H11

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 546 PF00005: ABC_tran" amino acids 29 to 186 (158 residues), 86.2 bits, see alignment E=1.3e-27 amino acids 308 to 466 (159 residues), 116.2 bits, see alignment E=7.3e-37 PF08352: oligo_HPY" amino acids 237 to 269 (33 residues), 23.9 bits, see alignment (E = 1.8e-08) amino acids 518 to 543 (26 residues), 16.7 bits, see alignment (E = 3.2e-06)

Best Hits

KEGG orthology group: K13896, microcin C transport system ATP-binding protein (inferred from 83% identity to vei:Veis_3811)

Predicted SEED Role

"ABC transporter ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165L2J3 at UniProt or InterPro

Protein Sequence (546 amino acids)

>Ac3H11_2908 ABC transporter ATP-binding protein (Acidovorax sp. GW101-3H11)
VTVISSANNPPLLQVQDLHVRFGTKEVVRGVNLHIAAGEKLALVGESGSGKTITALSLLR
LAGDAAITGQAHLQGRGDLLALTEREMRGVRGDDIAMVFQEPMTALNPLMTIGAQIAEIL
QLKRGLTGVQCAQATIDLLAQTGIPEPARRAGSFPHQLSGGQRQRAMIAMALASAPKLLL
ADEPTTALDVSLRGQILDLLSDLQRQTGMAVLLITHDLNLVRRFADRVAVMEQGVLVEQG
PVAEVFGAPQHAYTRRLIASQPRRDVALADPPAGTAPVVQTQDLRVVYPTPLPGIQGWFK
KGEFVAVQGATLQLLPGQTLGVVGESGSGKSTLAQAILGLLPSTGQLQVGGQAWQQPAMR
NTPANQQLRRRVQVVFQDPFSSLSPRLTVEEIVGEGLKVHEPTLTVAERRSRVEAILAEV
GLTEAQFPRLLARYPHEFSGGQRQRLAVARALIVQPQVLVLDEPTSALDVTIQQQVLGLL
QRLQKEKGLSYLLITHDVDVIRAMAHDVLVMKDGAVLESGSVVDVLDAPQHPYTQRLVAA
ATVPGG