Protein Info for Ac3H11_2324 in Acidovorax sp. GW101-3H11

Annotation: DNA methylase, putative

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 127 PF04480: DUF559" amino acids 2 to 107 (106 residues), 137.3 bits, see alignment E=9.5e-45

Best Hits

Swiss-Prot: 50% identical to YCJD_ECOLI: Uncharacterized protein YcjD (ycjD) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 57% identity to rpd:RPD_2808)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165KSC9 at UniProt or InterPro

Protein Sequence (127 amino acids)

>Ac3H11_2324 DNA methylase, putative (Acidovorax sp. GW101-3H11)
MDQRQFTKTLRQNMTDAEQLLWKHLRAHRMSDHKFRRQQPIGPYIVDFVHFGQRLIVEAD
GGQHVDSDHDAIRDAWLRSQGFTLLRFWNNDILHNTNAVLEAIWHAMHTDTPSPPTPLPQ
GARGGTP