Protein Info for Ac3H11_2073 in Acidovorax sp. GW101-3H11

Annotation: TRAP-type C4-dicarboxylate transport system, periplasmic component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR00787: TRAP transporter solute receptor, DctP family" amino acids 33 to 288 (256 residues), 306.7 bits, see alignment E=6.5e-96 PF03480: DctP" amino acids 34 to 308 (275 residues), 301 bits, see alignment E=4.6e-94

Best Hits

Swiss-Prot: 39% identical to DCTP_VEREI: Solute-binding protein Veis_3954 (Veis_3954) from Verminephrobacter eiseniae (strain EF01-2)

KEGG orthology group: None (inferred from 88% identity to lch:Lcho_4271)

Predicted SEED Role

"TRAP-type C4-dicarboxylate transport system, periplasmic component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165KQ74 at UniProt or InterPro

Protein Sequence (328 amino acids)

>Ac3H11_2073 TRAP-type C4-dicarboxylate transport system, periplasmic component (Acidovorax sp. GW101-3H11)
MQRKTFTRTLLAAAALAVALPGLAQAQAMKLTLGHGAAPGNPRHEAAVKFAETLKAKTAG
RIEVQVAPSAQLGDDAAMVTAVRTGALDMTANSQGAVSVAVPEYAAYGMPFMFSTPAQAF
KLLDGPLGQELAQKSADKGMVVLGYWDNGIRHMTNSKRPITKVEDMKGLKMRTPPDAVLV
DIMQALGAEAQQIKFAELYVALQQGVVDGQENPLVNIHASKLYEVQKHLALTSHMFQMTP
FLMSKRTWDRLSDADRKAVTEAAAEATALQRKMSQEADDKLLDDLKAKGVQVTTVDKAAF
AKATAAVDAKWLTTPIGPYLKKVIAAAR