Protein Info for Ac3H11_1696 in Acidovorax sp. GW101-3H11

Annotation: FIG065221: Holliday junction DNA helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 PF05496: RuvB_N" amino acids 24 to 147 (124 residues), 32 bits, see alignment E=3e-11 PF07728: AAA_5" amino acids 57 to 147 (91 residues), 22.3 bits, see alignment E=3.3e-08 PF00004: AAA" amino acids 58 to 178 (121 residues), 52.4 bits, see alignment E=2.3e-17 PF16193: AAA_assoc_2" amino acids 202 to 275 (74 residues), 79.9 bits, see alignment E=4.2e-26 PF12002: MgsA_C" amino acids 276 to 442 (167 residues), 227.7 bits, see alignment E=2.3e-71

Best Hits

KEGG orthology group: K07478, putative ATPase (inferred from 85% identity to vpe:Varpa_1388)

Predicted SEED Role

"FIG065221: Holliday junction DNA helicase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165KCA2 at UniProt or InterPro

Protein Sequence (459 amino acids)

>Ac3H11_1696 FIG065221: Holliday junction DNA helicase (Acidovorax sp. GW101-3H11)
MATRSASTSPAAQASTHQPLAERLRPRTLGEVIGQQHVLGPGMPLRLAFESGRPHSCILW
GPPGVGKTTIARLMADAFDAQFISISAVLGGVKDIREAVEKAQAARDGLHAGPQGSLIHE
SQRTIVFVDEVHRFNKSQQDAFLPHVESGLFTFIGATTENPSFEVNSALLSRAAVYVLQP
LSEEELKQIVALARDEKDFPAIESVAIDRLVAYADGDARRLLNTLETLAMAAAQEKLAEI
TDVWLLKVLGERMRRYDKGGEQFYDTISALHKSVRGSDPDAALYWLVRMLDGGADPRYMA
RRLVRMASEDIGLADPRALRLALDASEVYERLGSPEGELALAECVVYLAVAPKSNAVYKA
YNAARAWVKQDGTRPVPMHLRNAPTQLMKQLDYGKGYRYAHDEAGGFAAGENYLPEGMPE
PGFYQPVERGLEIKIAQKLRELRVRNAAAGDGLDPGEGG