Protein Info for Ac3H11_1460 in Acidovorax sp. GW101-3H11

Annotation: Type IV fimbrial biogenesis protein PilY1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1109 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF05567: Neisseria_PilC" amino acids 556 to 881 (326 residues), 180.7 bits, see alignment E=2.4e-57

Best Hits

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1109 amino acids)

>Ac3H11_1460 Type IV fimbrial biogenesis protein PilY1 (Acidovorax sp. GW101-3H11)
MKTNHKFQKTAIALIIGTIGFPQMVLAGDFLSLVQYPAGSASREPAPNIIVSVDNSGSMG
AAGITALKDALKETFRPANVPDDSIRLAYQSLWGCNTIPSTDVSCNSKNSMKVLRGLDNA
TDNSHRGNFIKWVDTLVAGGNTPTHRMQGVAGEYLKTTGIDNPYNFDPGTTEAPIHTCRR
AYNILMTDGGWNNNPANTINNDDGTNHTLPDGTSYDITAPETRIYRDDWGTNAVSTLSDM
AFYYWRQDLQSGINNQVVPLIKKSGSETFADGATTATIPQYWNPKNNPANWQHMVTYTIG
YNAAANWPNIGTNPMFNIAQGMYGGDFSRAIVGTRLWRDPLTTNETGRQEELWHTAINSR
GKFYPAQTSQDLVNAFKDIVGTIIADSTRPITGFSSASSSISNQGTTAFFSTYEADGWIG
GIGSKTVAAATGALSDNTAWGTTSTLPVRGKTTGDKLDELSAADISSRLIFTYNDTTAAG
TTFTWANLSAAQKILLNTVDSATDTLGEDRLNYVRGDRAKEGTTATEPFRVRRSRQGDIA
NSTLWYIGPPNNGLTVDGYRTFANAQRYRMPMLYAGGNDGMLHGFSAADGTEKIAYVPQG
VIKNLSQLSKQDYSHRYFVDGSPFTGDVNTGTSALPSWKTMLVGTLGAGGKGYYVLDVTR
PGYTAGAETSNFLAANASSLVVMDKTDGADSDIGNIFGDPVTSEANSQIATQITRMNNGR
WAVVLGNGYNSGSEDPVLLIQYLDGDKSIKKINAASTGAEATANGLSTPRLLDVNGDGTV
DMIYAGDLRGNIWKFDVSNADATNWKVAFSSAGCTACTPFYTAVEKANTANRQPITAAPN
LRPNTTVGGMMVVFGTGRNVTEGDRTDVTVQTLYSILDNTRYKLDTAAGPNLGKVLIDTA
VVTPAAIGTNGRDTKLAERVFSAPVIAGQGVNSSASFWRMPTTQTTLAYSLAGTQKGWYF
ELPLTGERVLNMPTFYDGSDVIDLLSIIPASGGNTTGETCQPTSTPARGYRTFLGVQYGL
KPTQQILDANGDGLYQAAAAQDNDTNRTTTSPEGISLRGKGIIIKIGGGGGGGGGGGGGG
GGGGGGGGGDGNSAQLPKPASTVNWRQLQ