Protein Info for Ac3H11_1362 in Acidovorax sp. GW101-3H11

Annotation: Transporter, LysE family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 204 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 47 to 65 (19 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details amino acids 112 to 136 (25 residues), see Phobius details amino acids 148 to 172 (25 residues), see Phobius details amino acids 184 to 203 (20 residues), see Phobius details PF01810: LysE" amino acids 15 to 199 (185 residues), 36.7 bits, see alignment E=1.6e-13

Best Hits

KEGG orthology group: None (inferred from 82% identity to vei:Veis_0361)

Predicted SEED Role

"Transporter, LysE family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165JZ03 at UniProt or InterPro

Protein Sequence (204 amino acids)

>Ac3H11_1362 Transporter, LysE family (Acidovorax sp. GW101-3H11)
MSAAELTALLLFCTAMSFSPGPNTTLSTALAANLGLKRALRFCLAVPAGWTLLMLGSGLG
LGALITGVPALRWAVTLLGVAYMLWLAFKLSRAGQLTEVDSNRLNVTFWQGVGLQFVNIK
AWMLALTLSAGWVVNAAGQPAANPGERLAIICGVMMVFAFTSNFVYALVGSLLRQWLAQG
ARLLWFNRALALVLVLTATWMLTL