Protein Info for Ac3H11_1019 in Acidovorax sp. GW101-3H11

Annotation: 3'-5' exonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 PF01612: DNA_pol_A_exo1" amino acids 43 to 210 (168 residues), 60.6 bits, see alignment E=8.6e-21

Best Hits

KEGG orthology group: None (inferred from 75% identity to rfr:Rfer_2827)

Predicted SEED Role

"3'-5' exonuclease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165JUL5 at UniProt or InterPro

Protein Sequence (215 amino acids)

>Ac3H11_1019 3'-5' exonuclease (Acidovorax sp. GW101-3H11)
MTATPPARRHHTSARPSHHPTPDKDQIALLEPFERLGTDRIALVSTPAQAEQACNALATA
RAWGFDTESKPTFVQGEQSDGPHIVQLATLDRAWVFQLHDPGCRARVAELLALRGVTKAG
FGLGDDTKRIQAKLGVQPSDVLELNTVFRQRGYRKDMGVKGAVAVLFNRRFIKSKKAATS
NWANEKLTEAQLVYAANDAWAALRVFHALQAPAAT