Protein Info for AZOBR_RS32845 in Azospirillum brasilense Sp245

Annotation: membrane protein of unknown function

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 67 to 86 (20 residues), see Phobius details amino acids 98 to 118 (21 residues), see Phobius details amino acids 170 to 176 (7 residues), see Phobius details amino acids 196 to 215 (20 residues), see Phobius details amino acids 221 to 241 (21 residues), see Phobius details amino acids 252 to 275 (24 residues), see Phobius details amino acids 303 to 320 (18 residues), see Phobius details PF04610: TrbL" amino acids 75 to 286 (212 residues), 29.9 bits, see alignment E=2.5e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8B0W0 at UniProt or InterPro

Protein Sequence (438 amino acids)

>AZOBR_RS32845 membrane protein of unknown function (Azospirillum brasilense Sp245)
MKNDDRVLATAIACSFFVALVILLPDTAQAQSSDPSCIACGLTERIEKASRTFREASFKN
LVGPASSFGRMLGLLWIYLFAVQIFLQPSQIPRFLETFLGRVGWLLAMVGILSAPQWILD
NIVTAGEQTFMGVAAYVLGTAQSAFGGTASVPPVGDSAWYTALWREVEGTVFPLVLKLIR
AGAPGAWYDIAALPRLILTLLIVAPFGFVLGIFMAFMVQVIFYTAAVTAIGPLLVVGLPW
GTTRSYLWGALKFMLGGGFTLVFAAVAMGTTSAMLQSQFQNVSLGDPSPEALQKLLDVTN
PEYWYTFIVGLVSVLLHLAAPRIASNIAGVTDSATSAAMVTAAGQAGAAKAGGMAHGKLF
GGGARNSIFDSAGNVATGGMSGAILNALPKGGQQMADVVAQRGLVGLAGAGAAAGARGIA
AGLRAAYHGTRGNGAPGA