Protein Info for AZOBR_RS31130 in Azospirillum brasilense Sp245

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 235 transmembrane" amino acids 42 to 58 (17 residues), see Phobius details amino acids 64 to 83 (20 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details amino acids 189 to 209 (21 residues), see Phobius details PF10028: DUF2270" amino acids 23 to 205 (183 residues), 225.8 bits, see alignment E=1.6e-71

Best Hits

KEGG orthology group: None (inferred from 55% identity to pde:Pden_1686)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AZR8 at UniProt or InterPro

Protein Sequence (235 amino acids)

>AZOBR_RS31130 membrane protein (Azospirillum brasilense Sp245)
MDDIATKAPKTHYTSAEVTALSHLYRAEIYRSTVWRTRLDATTNWAVVTTGIALSLTFSS
ATASPLPLVLVGLLVAVFLYIEARRYRFFDFWRIRAHVLELYFLGPILRGQGDQFARGWN
ETLFQDYQHPNLHITYLEAVGRRLRRNYGWIFLIQVVAYLGKLMIHPVPLSSLDELFARA
TIGPVPGEIVLLCGMAFHGTWMAIAFRTFRSRRGADRERPPPPATDAVLDLARGP