Protein Info for AZOBR_RS30780 in Azospirillum brasilense Sp245

Annotation: spermidine/putrescine ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 59 to 85 (27 residues), see Phobius details amino acids 97 to 120 (24 residues), see Phobius details amino acids 130 to 152 (23 residues), see Phobius details amino acids 174 to 194 (21 residues), see Phobius details amino acids 200 to 218 (19 residues), see Phobius details amino acids 230 to 250 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 77 to 250 (174 residues), 45.9 bits, see alignment E=2.8e-16

Best Hits

KEGG orthology group: None (inferred from 88% identity to azl:AZL_b03830)

Predicted SEED Role

"Putative ABC transporter permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AZI5 at UniProt or InterPro

Protein Sequence (264 amino acids)

>AZOBR_RS30780 spermidine/putrescine ABC transporter permease (Azospirillum brasilense Sp245)
MRTLNSLAAGLIALVLAAPILVVAGVSVNEKKALTFPPQGFSLAWYAEVFTDPGWRGALI
TSLVVATLSAALAVLIAFPLAWFLWRWRAPWARAFEVLGMTPFILPPVITALGFLSFWAA
VGEYGSPWTVVVSHAVFFVTLPLVTLSLGFGAVDRSYVEAAATMGADDRTVLRTVVMPLV
RPYVISGFAFAFVLSLNEYIVAYMVVGFTLETLPIKIFNALRYGYTPTMAAVTVLFVSLT
AVVFGLIAWFGDLPRLLGAWAKND