Protein Info for AZOBR_RS29175 in Azospirillum brasilense Sp245

Annotation: IclR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 PF09339: HTH_IclR" amino acids 9 to 59 (51 residues), 48.2 bits, see alignment 1.2e-16 PF01047: MarR" amino acids 15 to 61 (47 residues), 31.5 bits, see alignment 2e-11 PF01614: IclR" amino acids 131 to 252 (122 residues), 44.7 bits, see alignment E=1.8e-15

Best Hits

KEGG orthology group: K05818, IclR family transcriptional regulator, mhp operon transcriptional activator (inferred from 37% identity to avn:Avin_15090)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AYL5 at UniProt or InterPro

Protein Sequence (262 amino acids)

>AZOBR_RS29175 IclR family transcriptional regulator (Azospirillum brasilense Sp245)
MPSFKPVAALTRGLDVLRIVNELRDASVAALHKETGLDKATIVRMLETLEHEGYVTRNPS
NSGYVATGRTLQLSRGYDLHHRIGLLCEPILTEFRQAIGWPSDVALFDHDAMIVVQTSRE
TGPLFFNRRPGFRAPILETSIGRAYLAFCADSERERILARLRPRTDPANALASDPQRLEA
LLSDVRARGFACMDDSYSDREYSGQLWAMAVPVRDEQGILATLNIMMLRSAVSPESAQER
FLDMLITNANRLAHVLRHASCG