Protein Info for AZOBR_RS28100 in Azospirillum brasilense Sp245
Annotation: LysR family transcriptional regulator
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 50% identical to YBHD_ECOLI: Uncharacterized HTH-type transcriptional regulator YbhD (ybhD) from Escherichia coli (strain K12)
KEGG orthology group: None (inferred from 73% identity to bja:blr7098)Predicted SEED Role
"LysR family transcriptional regulator YbhD" in subsystem DNA-binding regulatory proteins, strays
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See G8AXW8 at UniProt or InterPro
Protein Sequence (296 amino acids)
>AZOBR_RS28100 LysR family transcriptional regulator (Azospirillum brasilense Sp245) MNFELVDLKAFVAVAELGSFNRAAELLNLSQPALSRRIQKLEDTLGVALFERSTRHVALT MVGRDFMPKVRRFLDEFESSLLGISDLGARSGGQITIASVPTAVFYFLPNAISRFSVAFP RIRIRILDLGANEGLEAVARGEADFGINFIGTSHPDIEFTPLAEDPFVVACRHDHPLAAR REVGWDELAAHRVITVGRTSGNRALIDNALAQHGLKLNWSYEITHLASSLGLVEAGLGVA VLPKLATPASGHPIIRTIPLSHPKISRTIGVVRRHGAILSPMAARFLEVLLGSWKA