Protein Info for AZOBR_RS27140 in Azospirillum brasilense Sp245

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 223 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 46 to 64 (19 residues), see Phobius details amino acids 70 to 87 (18 residues), see Phobius details amino acids 165 to 188 (24 residues), see Phobius details amino acids 194 to 212 (19 residues), see Phobius details TIGR03717: integral membrane protein, YjbE family" amino acids 12 to 213 (202 residues), 207.2 bits, see alignment E=8.1e-66 PF03741: TerC" amino acids 15 to 212 (198 residues), 147.9 bits, see alignment E=1.3e-47

Best Hits

KEGG orthology group: None (inferred from 59% identity to mes:Meso_0688)

Predicted SEED Role

"Integral membrane protein TerC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AX94 at UniProt or InterPro

Protein Sequence (223 amino acids)

>AZOBR_RS27140 membrane protein (Azospirillum brasilense Sp245)
MTDLFTAEALAALLQVIAIDLVLAGDNAIVVGMAAAAVPLAQRRKVIFWGIAAAMGLRVF
FALITTQLLAIIGLTLAGGVLLLWVCWKMFRELRSHGADEIAPDEAMDAPDPSGTVTAGV
AGNAAVAAAGATTFGAAIWQIVVADVSMSLDNVLAVAGAAKEHPTILVIGLVLSVVLMGA
AANMIAHVLHKHRWIGWVGLAIISYVALDMIWRGSNEVLRHMA