Protein Info for AZOBR_RS26060 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 711 PF13432: TPR_16" amino acids 12 to 69 (58 residues), 23.2 bits, see alignment 4.5e-08 amino acids 80 to 141 (62 residues), 16.7 bits, see alignment 4.9e-06 amino acids 191 to 254 (64 residues), 26 bits, see alignment E=6.1e-09 amino acids 226 to 286 (61 residues), 17.1 bits, see alignment 3.6e-06 PF13181: TPR_8" amino acids 77 to 106 (30 residues), 12 bits, see alignment (E = 0.00012) PF14559: TPR_19" amino acids 198 to 255 (58 residues), 29 bits, see alignment 6e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AWD7 at UniProt or InterPro

Protein Sequence (711 amino acids)

>AZOBR_RS26060 hypothetical protein (Azospirillum brasilense Sp245)
MNAPIPPETLLANAVALHRTGRLVEAEPLYRTLLERQPGHPDALHLLGVLRSQAGDPAEG
ASLITDAIARRGNVATYHSNLALALKALGRFAEAEAALRSGFALAPGAGPLVALGGLRRA
SGRHAEALAAYRTAQIIDPADGAAQEGIAHTTAELDAAGCATGDPKPSDTTLTAYRRAFR
LCPAASFTAFNLALTLQKAGDSGAAIPTFQAAAALDPSAPAVLSGLGLSLLSARQADRAS
TLLARVIRLRPDDAQDRFHLAEAAQAAGEAGRAATAYRDTAALQPTNYTAWENAALLDAR
EDNGSALAAHARGMMAAARAEHLFWKAPVYIAMHVANDRIGAGRPDAAKQALDHFCQAAA
IENRELLPWIDFLRGSLLLRKPGSEEAGRAVLKALVPALPFLRHVTFGDEFDALCRSVPL
AELADYRTGFQSEPAVDGVGPLLFAACDNRYLKLFAAPLLLTVDAFCGVGQRMHIHVADP
GPDIAEVVAGLRALLRRCRLTVSTERTPPDLDPASRRTLYTCLRLMRAPDVLDLHGRPPL
VMIDIDALLPIDPRRLVEAMAPDEEAMLIHRPDSLDCLYNTISNGLIVLRPTASTREVLE
RTATALLHWMRQRNMAYFLDQIALIQGFADVERRRGPVKILPIEELSRRLGVSDVFLPFF
DEKHRAGFTDQLSALTTRIHEETLTDNRSEEERRAALTGLVRRLQAAVLSR