Protein Info for AZOBR_RS25855 in Azospirillum brasilense Sp245

Annotation: amino acid adenylation (fragment)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1220 transmembrane" amino acids 855 to 872 (18 residues), see Phobius details PF00501: AMP-binding" amino acids 34 to 386 (353 residues), 238.7 bits, see alignment E=1.5e-74 amino acids 1091 to 1197 (107 residues), 88.3 bits, see alignment E=7.1e-29 TIGR01733: amino acid adenylation domain" amino acids 56 to 455 (400 residues), 318.9 bits, see alignment E=2.4e-99 PF00550: PP-binding" amino acids 542 to 604 (63 residues), 29.1 bits, see alignment 1.4e-10 PF00668: Condensation" amino acids 621 to 1067 (447 residues), 113.5 bits, see alignment E=1.7e-36

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AW88 at UniProt or InterPro

Protein Sequence (1220 amino acids)

>AZOBR_RS25855 amino acid adenylation (fragment) (Azospirillum brasilense Sp245)
MPDTTPHLPNDRLHLSNSFGPVKIWPDLRLHEGFERLAERHPTAPAVVTEAGILDYAGLD
AAANALAHALLALGLDREEPVGVLAERSGDLPQAFLGILKAGGVYVPMVADLPPERLANM
ARQAGMRLLIALDGLPIQDALADALSANGNAERPQAVLRPEFLDGDSLAKATERPDRPGP
VNGLAVILFTSGSTGQPKGVLIQHDACVNLALGHTEAQGVGPGDRVLLSTSPGFILGFRE
LCLPLLSGAAYVPASRALIDDPARLLDHMARLGVTIALFTPSYLRLLRGAVPAGLRMILT
AGERPNPDDARHYAHHLDYWNMHGATEVCGTICMHKVNPDGDGPLPSGRPFTNNAVHLLD
RHGNEVPDGAVGEIHVIGRGVSRGYLNQPELSAENFVETRFGRAYRTHDLGRWNEDGDLE
TLGRADDMVKVSGQSVSLGEIERTLLRHPLVSRAAALQHQGRLTAIVESADPEAAQSEDW
RAFLGRSLPAYMVPAQVKAVARMPISSAGKTDRRALLALAEEALTAARGTGGTLPQGDLE
RAIAGVWEEVLDTRPVMRDDPFFAIGGTSLLAIAVGQRLHALGHPVTVPVILASQTVKAL
ARRIAEQKGKDTAPPDLSEGPATAGQEDFWVAAKLGFAAAGSHVVRVLSVRGPVPEAERW
RAAWAALLERHPALRTAFHADAEGRVRWRTVPVTALPPSAGFSIDRCHVPEEARELIAGY
AETPFALTQAPLARAGLMLIESGNETLFWFVLHHAVVDGQSARTVQEDVLALLLGHPLPP
APHGIALATRDEAHHLRSNGAAQDRAFWNAKLDTLPPEAFEEFPLDQPRPVTPGGRSAPP
LAERLDAATTAALTAIAKAQGIGLHGLLLVILAAETRRRGGRTALILGTGVSLRPAGAED
AVGHFVNLVPVLLPGTTAALAGQVRAAQDALTEAVGHAGLPANLIQREFRQRRPDALPPA
RPNLFSVALTANPPRTSADPASGLSLSPRRLPGALAHPAAGLDFAFSHEPVTAEGGEELE
LALLWNPDVYTETTARSWLAGFAAWARWLAADPTRLDSPLPALLPEEAALLDRWERGEER
PRPARRTHELFEEIAARQPDRPAVVTRSGVRTYGDLNRDADRIAAALLGCGVARQEAVAV
LTGCSPGLPAAVLGVWKAGAAYLPLAQDLPPERMAYMVRDAGVRLLIALDGQPIPPALAE
GRADADPPGHPRRLRRTEPL