Protein Info for AZOBR_RS23030 in Azospirillum brasilense Sp245

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 554 PF00005: ABC_tran" amino acids 26 to 185 (160 residues), 103.6 bits, see alignment E=7.2e-33 amino acids 304 to 453 (150 residues), 121.7 bits, see alignment E=1.9e-38 PF08352: oligo_HPY" amino acids 236 to 277 (42 residues), 32.9 bits, see alignment 3.3e-11 amino acids 505 to 530 (26 residues), 25.9 bits, see alignment (E = 5.3e-09)

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein K02032, peptide/nickel transport system ATP-binding protein (inferred from 77% identity to azl:AZL_b03250)

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AUB2 at UniProt or InterPro

Protein Sequence (554 amino acids)

>AZOBR_RS23030 ABC transporter ATP-binding protein (Azospirillum brasilense Sp245)
MTETPLLDVRNLTIDLPRGADRPHAVQDLTFTLEHGEILCVVGESGSGKSMTAHAVMGLL
PKAVTVSSGEIRHQGTNVFSLPERDQRALRGGRIAMIFQEPMTALNPLMRVGDQIDEVLR
YHTTLDRAARRARVVELLASVGLPEPDHLRRSYPFRLSGGQRQRVMIAMALAVEPDILIA
DEPTTALDVTTQKQILELIQDIQAKRRMGVMFITHDFGVVAEIAHRVAVMQRGQIVEIGT
AEEVLNRPKHPYTRQLIAAVPHLIEHREDFTRARQPVLTAEKVCKTFHIGGGFFTPGRKV
VAGDDLSLTIHQGETVGLVGESGSGKSTLGRSIVGLIKPDSGRILFEGVDLLSLSRPAFR
PYRRHVQMVFQAPYASLNPRHTVGDIITQGPVAFGEDRHKALEKAKALLKLVGLDASAAE
RFPHEFSGGQRQRISIARALALEPKLLIADEPVSALDVSVQAQVLDLLEDLRHRLNLSML
FITHDLRIAAQICDTIAVMQKGRIVEIGPAKEVFGNPQHAYTRTLLDAIPGKGWTIPEDV
VPVTRRSAALRNSA