Protein Info for AZOBR_RS22485 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 transmembrane" amino acids 6 to 31 (26 residues), see Phobius details amino acids 43 to 64 (22 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details amino acids 108 to 130 (23 residues), see Phobius details amino acids 136 to 157 (22 residues), see Phobius details amino acids 165 to 183 (19 residues), see Phobius details amino acids 196 to 218 (23 residues), see Phobius details TIGR03717: integral membrane protein, YjbE family" amino acids 9 to 185 (177 residues), 227.2 bits, see alignment E=5.8e-72 PF03741: TerC" amino acids 11 to 184 (174 residues), 169.8 bits, see alignment E=2.7e-54

Best Hits

Swiss-Prot: 43% identical to YJBE_BACSU: Uncharacterized membrane protein YjbE (yjbE) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 58% identity to aaa:Acav_4621)

Predicted SEED Role

"Membrane protein TerC, possibly involved in tellurium resistance"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8ATY6 at UniProt or InterPro

Protein Sequence (234 amino acids)

>AZOBR_RS22485 hypothetical protein (Azospirillum brasilense Sp245)
MDTSDFMIALLQIIWIDILLSGDNALVIALACRSLPPKQQKIGVFLGTGAAIVLRVLFAV
IIAYLLAIPYLKIIGGVLLFWIAIKLMLPTEEEAQAEHAGTSAGLWGVVRTIVIADAVMS
LDNVIAIAAASHGNTVLLILGLAISIPLIVFGSTLILKAIERLPALVYAGAGLLGYIAAE
VILTDPSIHSHVTESLPVLTGTAPFVAALGVMTAGFLMARSINRRRAVVETDPA