Protein Info for AZOBR_RS20435 in Azospirillum brasilense Sp245

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 46 (18 residues), see Phobius details amino acids 59 to 79 (21 residues), see Phobius details amino acids 91 to 108 (18 residues), see Phobius details amino acids 116 to 135 (20 residues), see Phobius details amino acids 147 to 164 (18 residues), see Phobius details amino acids 176 to 193 (18 residues), see Phobius details amino acids 205 to 223 (19 residues), see Phobius details amino acids 235 to 254 (20 residues), see Phobius details amino acids 260 to 278 (19 residues), see Phobius details PF00892: EamA" amino acids 4 to 132 (129 residues), 46.2 bits, see alignment E=2.6e-16 amino acids 146 to 277 (132 residues), 45 bits, see alignment E=6.1e-16

Best Hits

KEGG orthology group: None (inferred from 63% identity to rru:Rru_A3580)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8ANV8 at UniProt or InterPro

Protein Sequence (285 amino acids)

>AZOBR_RS20435 membrane protein (Azospirillum brasilense Sp245)
IGGLAILMWSTLALLTALSGTIPPFQLVAMSFGVAFIIGTAAGAARGKDVIGVLRQPWRV
WLLGVAGLFGYHFFYFLAFRLAPGAAVEVNLLNYLWPLLIVLFSALLPGERLKRGHVLGA
LCGLAGTVLIVTGGGRGLSLDAGDTPGYLSAMAAAVLWASYSVLSRRFGDVPTEAVGGFC
LATAVLAGVSHLLFETTVAPSGGEWLAVLAMGIGPVGAAFFVWDHGVKHGDIRALGVLSY
ATPLTSTLLLILFGQAAGGWAVWAACALIMGGAVLASRDVLRGDQ