Protein Info for AZOBR_RS20015 in Azospirillum brasilense Sp245

Annotation: C4-dicarboxylate ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 503 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 37 to 56 (20 residues), see Phobius details amino acids 68 to 86 (19 residues), see Phobius details amino acids 107 to 136 (30 residues), see Phobius details amino acids 148 to 172 (25 residues), see Phobius details amino acids 184 to 208 (25 residues), see Phobius details amino acids 228 to 254 (27 residues), see Phobius details amino acids 260 to 275 (16 residues), see Phobius details amino acids 294 to 314 (21 residues), see Phobius details amino acids 334 to 362 (29 residues), see Phobius details amino acids 372 to 400 (29 residues), see Phobius details amino acids 426 to 447 (22 residues), see Phobius details PF06808: DctM" amino acids 14 to 450 (437 residues), 343.9 bits, see alignment E=6.4e-107 TIGR00786: TRAP transporter, DctM subunit" amino acids 24 to 451 (428 residues), 323.1 bits, see alignment E=1.1e-100

Best Hits

KEGG orthology group: None (inferred from 85% identity to azl:AZL_012850)

Predicted SEED Role

"TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8ATS4 at UniProt or InterPro

Protein Sequence (503 amino acids)

>AZOBR_RS20015 C4-dicarboxylate ABC transporter (Azospirillum brasilense Sp245)
MAAFLIENMAPLMFAALVLFLLMGFPVAFALAANGLLFGLIGIELGLLTPALFQALPERV
FGIMRNDTLLAIPFFTFMGLILERSGMAEDLLDTVGQLFGPLRGGLAYAVIFVGALLAAT
TGVVAASVISMGLISLPIMLRYGYDRRLASGVIAASGTLAQIIPPSLVLIILADQLGRSV
GDMYAGALVPGLVLTGLYAGYILVVSIVRPEFTPALPPEARSLRGFQLLFRVLTSLVPPL
VLIFLVLGTIFIGIATPTEGGAMGAAGAMILALMKRQLSWSLMRQAMDTTAKLSSFVIFI
LIGSTVFGLVFRAVNGDLWVEHLLTSLPGGELGFLIVVNIMVFLLAFFLDFFELAFIIVP
LLAPVAEKLGIDLIWFGVLLGVNMQTSFMHPPFGFALFFLRSVAPREDYKDKITGKIIKK
ITTGQIYWGAVPFVCIQLIMVALVIMFPEMVFSGLDRGEPIDLDNVKIEIPAFDSGEPPP
PFGAPEQPAEDPNADLMRQLQGK