Protein Info for AZOBR_RS18230 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 983 transmembrane" amino acids 294 to 313 (20 residues), see Phobius details PF14331: IcmF-related_N" amino acids 67 to 263 (197 residues), 95.9 bits, see alignment E=1.3e-31

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8ASM4 at UniProt or InterPro

Protein Sequence (983 amino acids)

>AZOBR_RS18230 hypothetical protein (Azospirillum brasilense Sp245)
MRGPLRRDDIPCFLTFGVGGPALLATDPTHVRWPEDGNGENGCWWFCEGAAILHVGADSA
DGSRLGASWPALVAAMRKRPMRRPLDGVLLMVGADELRAAAERPGPRDALAKRGAALRER
LRTLRDDLGVVGPVHVVVVRAESLDGFTDLCAAMPSALLDGVLGWTNPQDWAKPFEPRRI
DEAFEAIAADIAVLEADAFAAGTAGVRLPLLPAALDTLRHPLALFLDGVLGGDDQTEPFP
LRGIALTGAYAPATGGRRPVFARNLLPGRAFAEAGYGRPSDAAYQQAHKRRRMAQAALAA
SVAGLSVAAWQGVSSVSAGSPPVVAATADLRRALLARDAVTDGALAGRVIAATAAMERSP
LATPLLPTSLFSTFDEDKKRLASVTLRRSVLRPIRDALLPSATMADLPPVANPQKVEDLP
AFRRLAEQLDRIGGRRDALERYDRFRRNSGFDELNALAESVYGAVPRSPMTATDGYITRI
AAGADLPNLDARTIAAAVRAESVQLAAPLAEELYGRNPLRQRAEALAERLRGLPETPTAE
DVDDVRRLTGAVAEAVAWPIAGALQEPARGLPDAIRVALQKAAIADLPGRDTTDRITEAL
STAATGARAAVLALDAPQTGALFAVADGGALVLNPAVTALPDALAAALPAAVPDAPPAEA
VKPDETKPAASKPAEPKPAEPKPILPEAEPAKPVAAAPPLPPRPAPSPEPAAPPPAAPPS
ANVEPPAVVAHLPVPPRMPVETPVPDGDAALSKLSAAFTQTLAGRFPFVGSEQARGASDA
DPQDVRRFYRQLDEHRAAVMRTATPEVAAFMERMEAARLLLEAVARPAPVSVRLTYGANR
AQEVGAEHIIDWSVRSGASAVGASANGGTLAWTPGQPVLLSARWAAGSPFRPKGAPAGGT
AAATGDTITLAERGPWALLRLLKSHAPSSSRDGLLLRVALPTQTIEGQPVRDTVLVLGAA
VSTGGRNELPARALDLPARFPQR