Protein Info for AZOBR_RS17175 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 420 TIGR00702: YcaO-type kinase domain" amino acids 32 to 400 (369 residues), 221.2 bits, see alignment E=1.2e-69 PF02624: YcaO" amino acids 80 to 400 (321 residues), 293.9 bits, see alignment E=8.4e-92

Best Hits

KEGG orthology group: K09136, ribosomal protein S12 methylthiotransferase (inferred from 77% identity to azl:AZL_d00180)

Predicted SEED Role

"FIG00820054: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8ARW1 at UniProt or InterPro

Protein Sequence (420 amino acids)

>AZOBR_RS17175 hypothetical protein (Azospirillum brasilense Sp245)
MPLDFVRGIARDPAMSDQPLKVHTTGTHRIATPDQTLARVAPFLPVMGITRVANVTGLDH
VGIPVVMVTRPNARSISVAQGKGVTLAAAKASGVMESIESYHAERITLPLKYASYDELRW
THRVVDVTRLPRLSTSAFTPHTPMLWIEGDDLLGGGRTWVPFETVHLNFTLPMPPGSGCF
LAGSNGLASGNSLAEATAHAMTELVERDAATLWRLTSPEAQAATRIDPASVADPVCRSLL
DRFDDAGVAVGLWDITSDIGLPAFLCRIATREDSPQHSIRPAMGMGCHAAPEVALSRALT
EAAQSRLTFIAGARDDMPRSEYERHLDPAQHARWTALITEGAGRRDFAAIPSLAGRTIEE
DLASQLDRLRDAGIEEAVAVDLTKPEFGIAVVRLVIPGLEGLDSSPDYAMGARARAVAGL