Protein Info for AZOBR_RS16860 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 468 PF13432: TPR_16" amino acids 9 to 65 (57 residues), 17.8 bits, see alignment 2.1e-06 amino acids 53 to 104 (52 residues), 21.2 bits, see alignment 1.8e-07 amino acids 114 to 173 (60 residues), 27.7 bits, see alignment E=1.7e-09 PF07719: TPR_2" amino acids 72 to 104 (33 residues), 25.7 bits, see alignment (E = 4.6e-09) PF13181: TPR_8" amino acids 73 to 104 (32 residues), 12.6 bits, see alignment (E = 7.2e-05) PF13176: TPR_7" amino acids 74 to 108 (35 residues), 14.7 bits, see alignment 1.6e-05 PF14559: TPR_19" amino acids 88 to 138 (51 residues), 35.6 bits, see alignment 5.4e-12 PF13414: TPR_11" amino acids 88 to 120 (33 residues), 28.6 bits, see alignment (E = 5.1e-10) PF13174: TPR_6" amino acids 107 to 137 (31 residues), 12.3 bits, see alignment (E = 0.00013) PF02709: Glyco_transf_7C" amino acids 357 to 419 (63 residues), 47.5 bits, see alignment E=6.4e-16

Best Hits

KEGG orthology group: None (inferred from 76% identity to azl:AZL_a03820)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8ARP1 at UniProt or InterPro

Protein Sequence (468 amino acids)

>AZOBR_RS16860 hypothetical protein (Azospirillum brasilense Sp245)
MATIEEALGIALDHLKAGRQAEAMDLYGRILDADPDNPDALHRLGLLAALDGDRERGMAM
IARSVERDGGDADAHFNLGALLHVAWRTEEAIAAYRRALALRPDFPDAEYHLSEALQAIG
RIGEALEVLDALLARHPHFVPGWRQKGDIEADLGRPGAAVSFYEMALAIDPRDEGSRERL
AAQAAVYRARRAILDGAGPDGRLDLRDVTVLVPFRADSADRKRNLRWIVSFLLKHADTTV
LIGEDKAGPSDVADALGPELAARCRHLHLTGNDTPFTHKAHLLNRMVEAAETPIVALHDT
DVVVDPVQYALARDAVRGGAAMAFPYNGLFFWILGREVHRFGHTLSAAPLNAVCPRFPLM
HRDSPGGGAFFDRAALLAAGGYNERFVSWGYEDDEIVERLRRLGLRVERVPGPLYHLEHA
RPENSTHRNPFIDANKAELERIQAMDADALRAEIAAGRLRRPLFSSAG