Protein Info for AZOBR_RS16275 in Azospirillum brasilense Sp245

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 transmembrane" amino acids 10 to 41 (32 residues), see Phobius details amino acids 56 to 80 (25 residues), see Phobius details amino acids 148 to 169 (22 residues), see Phobius details amino acids 206 to 229 (24 residues), see Phobius details amino acids 233 to 263 (31 residues), see Phobius details amino acids 269 to 289 (21 residues), see Phobius details amino acids 301 to 335 (35 residues), see Phobius details PF01594: AI-2E_transport" amino acids 14 to 334 (321 residues), 227.7 bits, see alignment E=1.1e-71

Best Hits

KEGG orthology group: None (inferred from 75% identity to azl:AZL_013130)

Predicted SEED Role

"Putative permease often clustered with de novo purine synthesis" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8ARA7 at UniProt or InterPro

Protein Sequence (353 amino acids)

>AZOBR_RS16275 membrane protein (Azospirillum brasilense Sp245)
VTAGKQIRFWLIGLGLFVLALWVLSGMLLPFVMGLAVAYLLDPVVDRVERWRLPRWLATT
LVLLSFVLVLVLMVLLLLPLVQSQVSHLIEVLPNYANAARDRLLPMLDRLIHRLSPEDVE
RLRGAAGNYAGDVVGWIGRVLKHILSSGLALFDVLSVMFITPIVAFYLMRDWDILVAKVN
GWLPLHHAATIREQAREVDETLAGFVRGQALVCLVLGVFYAVALSLAGLDFGLVIGLMAG
LLSFIPYVGSLFGFVSSTGLALLQFDDPWRIAIVIAIFLFGQAVEGNVLTPKLVGEKVGL
HAVWVIFALLAGGSLFGFVGVLLAVPVAAVIGVLTRFALGRYLESPYYRGTPS