Protein Info for AZOBR_RS14605 in Azospirillum brasilense Sp245
Annotation: ABC transporter substrate-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 53% identical to TAKP_RHOS4: Alpha-keto acid-binding periplasmic protein TakP (takP) from Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
KEGG orthology group: None (inferred from 77% identity to azl:AZL_a06400)Predicted SEED Role
"TRAP transporter solute receptor, unknown substrate 6"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See G8AQ63 at UniProt or InterPro
Protein Sequence (368 amino acids)
>AZOBR_RS14605 ABC transporter substrate-binding protein (Azospirillum brasilense Sp245) VKRRAFLKSAGAGAAAAGAGLAVAGVAAPAIAQSQPEIQWRLASSFPKSTDILFGASELI ARRVAESTDGKFQIRAFPGGELVPGLQVLDAVQNGSVQCGHTCGYYYVGKDPTFAFDTAI PFGPNARQTTAWFQAGGLDLMRAFMKNHNVIQFPAGNTGAQMGGWYRKEIKTAADFQGLK IRIAGITGQIMSKMGATPTQIAGADVYPALEKGTIDATEFVGPYDDERLGFHQVAKYYYY PGWWEGGPNVSLYVNLQEWEKLPKSYQSILTAACAEANTYMIARYDSENAKALKRLVAKG TLLRAYPRDLMEQAHKIAFEYYDELAKTNPNFKTIYESWKPFLDETQLWFRVAELPYDSF VASAGTKK