Protein Info for AZOBR_RS14595 in Azospirillum brasilense Sp245

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 610 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF00496: SBP_bac_5" amino acids 108 to 511 (404 residues), 252 bits, see alignment E=5.1e-79

Best Hits

Swiss-Prot: 49% identical to Y4WM_SINFN: Uncharacterized protein y4wM (NGR_a00920) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: K13893, microcin C transport system substrate-binding protein (inferred from 61% identity to mag:amb4389)

Predicted SEED Role

"ABC transporter, periplasmic substrate-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See G8AQ61 at UniProt or InterPro

Protein Sequence (610 amino acids)

>AZOBR_RS14595 hypothetical protein (Azospirillum brasilense Sp245)
MRRVAAGLLMGLIAAAAAVAGPAGAQPQHGMARHGMALYGEPKYGPDFRHFDYVNPDAPK
GGKVTLQAIGSFDTLNPFTLRGVPAAGATLIYDTLMTGSADEPFTEYGLLAESVEMPEDR
SSITFNLRSGARWHDGKPVTAEDVVFSFTILTESHPFYRSYYGAVDKVEADGERRVRFTF
KPGDNRELPMIVGQLPVLPKHYWEGKDFQSTTLEPPLGSGPYRIASFDPGRGITYERVAD
YWGKDLPVNVGRNNFGSMAYEYYRDASVALQAFRGGLYDFRQENVAKTWATGYDFDAVRD
GKVVKEEIANEVPAGMQGFVFNTRRPVFANPKVRQAIAYAFDFEWTNQTLFYGAYKRTES
YFENSPLQSRDLPQGRELAILEPLRGKIPAEVFEKTYHPPSTEGQNGLRRNLLEAKRLLD
EAGTDVRNGVRVDVATGTPLDFEILLDSPTFERVTLPFIENLKRLGIRASIRTVDTTQYE
NRTRDFDFDMVVHVWPQSLSPGNEQTGYWGSAFADRPGSQNMAGVRSEAVDHLIGEIVRA
NSQEDLKAAVSALDRVLLWNHYVVPHWYSGVYRVAYWSRLKRPDTVPPYSISFDAWWLSD
ASSAGPGKAP